SNP Profiles matching GU 255

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
1._GU_255_/P	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
2._GU_255_/P	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
3._GU_255_/P	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
4._GU_255_/P	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
5._GC-08-282-8-54	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
6._GC-08-282-8-54	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
7._GC-08-282-8-54	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
8._GC-08-282-8-54	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
9._GC-08-282-8-54	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
10._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
11._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
12._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
13._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
14._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
15._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
16._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
17._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
18._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
19._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
20._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
21._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	AG	TT
22._MARPER_37	CC	AA	CC	TT	-	AA	TT	-	CC	-	AA	AG	AG	TT
23._RUQ_1089	CC	AG	CC	TT	TT	AC	TT	TT	CC	CC	AA	AG	AG	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
1._GU_255_/P	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
2._GU_255_/P	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
3._GU_255_/P	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
4._GU_255_/P	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
5._GC-08-282-8-54	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
6._GC-08-282-8-54	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
7._GC-08-282-8-54	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
8._GC-08-282-8-54	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
9._GC-08-282-8-54	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
10._NA_168	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
11._NA_168	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
12._NA_168	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
13._NA_168	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
14._NA_168	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
15._GC-01-112-6-09	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
16._GC-01-112-6-09	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
17._GC-01-112-6-09	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
18._GC-01-112-6-09	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
19._GC-01-112-6-09	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
20._NA_168	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
21._GC-01-112-6-09	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG
22._MARPER_37	AT	GG	-	CC	-	GG	AA	CC	-	GG	-	CC	CC	AA
23._RUQ_1089	AT	GG	CT	CC	CC	GG	AA	CC	AA	GG	GT	CC	CC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
1._GU_255_/P	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
2._GU_255_/P	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
3._GU_255_/P	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
4._GU_255_/P	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
5._GC-08-282-8-54	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
6._GC-08-282-8-54	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
7._GC-08-282-8-54	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
8._GC-08-282-8-54	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
9._GC-08-282-8-54	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
10._NA_168	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
11._NA_168	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
12._NA_168	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
13._NA_168	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
14._NA_168	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
15._GC-01-112-6-09	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
16._GC-01-112-6-09	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
17._GC-01-112-6-09	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
18._GC-01-112-6-09	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
19._GC-01-112-6-09	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
20._NA_168	GG	AT	CT	AG	CC	AA	_	GG	AC	TT	GG	X_X	X_X	X_X
21._GC-01-112-6-09	GG	AT	CT	AG	CC	AA	_	GG	AC	TT	GG	X_X	X_X	X_X
22._MARPER_37	GG	-	CT	AG	-	-	-	GG	-	TT	-	X_X	X_X	X_X
23._RUQ_1089	GG	AT	CT	AG	CC	AC	CT	GG	AC	TT	GG	X_X	X_X	X_X

Input profile: GU_255_/P

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Mars Center for Cocoa Science, Brazil

Location: 8854 1

Dapeng Zhang, 2016

1._GU_255_/P

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8854 9

Dapeng Zhang, 2016

2._GU_255_/P

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8854 6

Dapeng Zhang, 2016

3._GU_255_/P

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8854 4

Dapeng Zhang, 2016

4._GU_255_/P

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8854 3

Dapeng Zhang, 2016

5._GU_255 GC-08-282-8-54

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._GU_255 GC-08-282-8-54

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._GU_255 GC-08-282-8-54

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._GU_255 GC-08-282-8-54

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._GU_255 GC-08-282-8-54

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

10._NA_168

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 6 > FP

Dapeng Zhang, 2016

11._NA_168

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 4 > FP

Dapeng Zhang, 2016

12._NA_168

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 1 > FP

Dapeng Zhang, 2016

13._NA_168

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 12

Dapeng Zhang, 2016

14._NA_168

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._NA_168 GC-01-112-6-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

16._NA_168 GC-01-112-6-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

17._NA_168 GC-01-112-6-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

18._NA_168 GC-01-112-6-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

19._NA_168 GC-01-112-6-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

20._NA_168

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 3 > FP

Dapeng Zhang, 2016

21._NA_168 GC-01-112-6-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

22._MARPER_37

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 661

Dapeng Zhang, 2014

23._ICS_39 RUQ_1089

91 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25